PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131197001
Common NameGSBRNA2T00131197001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 243aa    MW: 27107.4 Da    PI: 9.7193
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131197001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.84.1e-373897362
               zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         +  lkcprCds ntkfCyynnyslsqPr++Ck+CrryWt+GG+lrnvP+Gg++r+++k s
  GSBRNA2T00131197001 38 QPVLKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGTLRNVPIGGSTRNKNKPS 97
                         56789*************************************************988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-293595IPR003851Zinc finger, Dof-type
PfamPF027014.8E-324095IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.1464195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010227Biological Processfloral organ abscission
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMTSSHQSHT TSFNPRRIKT KAKPPHQISH MRPSPAAQPV LKCPRCDSVN TKFCYYNNYS  60
LSQPRHYCKN CRRYWTRGGT LRNVPIGGST RNKNKPSSLQ VISSPPPIVA PLSSHELVDG  120
FRMNRAMIDP SSTAFPGGFS GYMFSLDPNY NLASSSIESL SSLNQDLHQK LQQQRLFTSM  180
FQQDSPPVMF HNVELLPPST ATTEWAFDRS AIGEATSGSN ENNGEREGNL GSWYYNPNNS  240
MP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.147510.0seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00478DAPTransfer from AT4G38000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131197001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2286131e-50AK228613.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL15-43-I22.
GenBankAL0355381e-50AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBankAL1615921e-50AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBankBT0057671e-50BT005767.1 Arabidopsis thaliana clone RAFL15-43-I22 (R20996) putative Dof zinc finger protein (At4g38000) mRNA, complete cds.
GenBankBT0060921e-50BT006092.1 Arabidopsis thaliana clone U20996 putative Dof zinc finger protein (At4g38000) mRNA, complete cds.
GenBankCP0026871e-50CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589609.10.0PREDICTED: dof zinc finger protein DOF4.7
SwissprotQ84K521e-115DOF47_ARATH; Dof zinc finger protein DOF4.7
TrEMBLA0A078BZG00.0A0A078BZG0_BRANA; BnaC01g01040D protein
TrEMBLA0A0D3A1450.0A0A0D3A145_BRAOL; Uncharacterized protein
STRINGBra011800.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152861518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38000.14e-97DNA binding with one finger 4.7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]